GPL license added

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 182b687..e48ff36 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -1,6 +1,24 @@
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+*/\r
+\r
 package jalview.datamodel;\r
 \r
-import jalview.jbgui.*;\r
 import java.util.*;\r
 \r
 /** Data structure to hold and manipulate a multiple sequence alignment\r
@@ -63,10 +81,15 @@ public interface AlignmentI {
   public void          sortByPID(SequenceI s) ;\r
   public void          sortByID() ;\r
 \r
+  //Annotations\r
+  public void addAnnotation(AlignmentAnnotation aa);\r
+  public void deleteAnnotation(AlignmentAnnotation aa);\r
+  public AlignmentAnnotation [] getAlignmentAnnotation();\r
+\r
   public void          setGapCharacter(char gc);\r
   public char          getGapCharacter();\r
 \r
-    public Vector        getAAFrequency();\r
+  public Vector        getAAFrequency();\r
 }\r
 \r
 \r