JAL-2349 reusable contact map holder for SequenceI and AnnotatedCollectionI

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 93a8c26..e99563b 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -20,7 +20,6 @@
  */
 package jalview.datamodel;
 
-import java.util.Collection;
 import java.util.Hashtable;
 import java.util.List;
 import java.util.Map;
@@ -624,18 +623,4 @@ public interface AlignmentI extends AnnotatedCollectionI
    */
   public HiddenColumns propagateInsertions(SequenceI profileseq,
           AlignmentView input);
-
-  /**
-   * resolve a contact list instance (if any) associated with the annotation row
-   * and column position
-   * 
-   * @param _aa
-   * @param column
-   * @return
-   */
-  ContactListI getContactListFor(AlignmentAnnotation _aa, int column);
-
-  AlignmentAnnotation addContactList(ContactMatrixI cm);
-
-  Collection<ContactMatrixI> getContactMaps();
 }