*/
package jalview.datamodel;
-import java.util.Collection;
import java.util.Hashtable;
import java.util.List;
import java.util.Map;
*/
public HiddenColumns propagateInsertions(SequenceI profileseq,
AlignmentView input);
-
- /**
- * resolve a contact list instance (if any) associated with the annotation row
- * and column position
- *
- * @param _aa
- * @param column
- * @return
- */
- ContactListI getContactListFor(AlignmentAnnotation _aa, int column);
-
- AlignmentAnnotation addContactList(ContactMatrixI cm);
-
- Collection<ContactMatrixI> getContactMaps();
}