JAL-2629 multiple HMMs can now be dropped onto an alignment

[jalview.git] / src / jalview / datamodel / AlignmentI.java

diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 948fd1b..edd5b66 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -591,6 +591,11 @@ public interface AlignmentI extends AnnotatedCollectionI
 
   public void setHiddenColumns(HiddenColumns cols);
 
+  public Map<Integer, SequenceI> getHMMConsensusSequences(boolean remove);
+  
+  public List<SequenceI> getHMMConsensusSequences();
+  
+
   
 
 }