AlignedCodonFrame getMapping(SequenceI mapFrom, SequenceI mapTo);
public void setHiddenColumns(HiddenColumns cols);
-
- /**
- * Returns all HMM consensus sequences.
- *
- * @param remove
- * If true, remove all HMM consensus sequences from the alignment.
- * @return
- */
- public List<SequenceI> getHMMConsensusSequences(boolean remove);
/**
* Insert a sequence at a position in an alignment