/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
* replaces oldref with newref in the alignment order.\r
* @param oldref\r
* @param newref\r
- * @return\r
+ * @return true if oldref was contained in order and replaced with newref\r
*/\r
public boolean updateSequence(SequenceI oldref, SequenceI newref) {\r
int found=Order.indexOf(oldref);\r