JAL-2424 final contig now an inclusive range

[jalview.git] / src / jalview / datamodel / AlignmentView.java

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index fa72e80..1e34036 100644 (file)
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -277,8 +277,7 @@ public class AlignmentView
     if (!seqcigararray.isSeqCigarArray())
     {
       throw new Error(
-              MessageManager
-                      .getString("error.implementation_error_can_only_make_alignmnet_from_cigararray"));
+              "Implementation Error - can only make an alignment view from a CigarArray of sequences.");
     }
     // contigs = seqcigararray.applyDeletions();
     contigs = seqcigararray.getDeletedRegions();
@@ -971,14 +970,14 @@ public class AlignmentView
       if (start < fwidth)
       {
         viscontigs[nvis] = start;
-        viscontigs[nvis + 1] = fwidth; // end is inclusive
+        viscontigs[nvis + 1] = fwidth - 1; // end is inclusive
         nvis += 2;
       }
       return viscontigs;
     }
     else
     {
-      return new int[] { 0, width };
+      return new int[] { 0, width - 1 };
     }
   }