for (int i = 0, j = sequences.length; i < j; i++)
{
aln[i] = sequences[i].getSeq(c);
- }
- // Remove hidden regions from sequence objects.
- String seqs[] = getSequenceStrings(c);
- for (int i = 0, j = aln.length; i < j; i++)
- {
- aln[i].setSequence(seqs[i]);
+ // Remove hidden regions from sequence
+ aln[i].setSequence(getASequenceString(c, i));
}
return aln;
}