fix for JAL-701 - ensure '<' appears in tooltip in application and allow html tags...

[jalview.git] / src / jalview / datamodel / AlignmentView.java

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index 2a93861..ebe8301 100644 (file)
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -107,7 +107,7 @@ public class AlignmentView
     {\r
       Vector sel = selection.getSequences(null);\r
       this.selected = new Vector();\r
-      selseqs = selection.getSequencesInOrder(alignment, false);\r
+      selseqs = selection.getSequencesInOrder(alignment, selectedRegionOnly);\r
     }\r
     else\r
     {\r