* alignment, parent group).
*/
AnnotatedCollectionI getContext();
-
- /**
- * Return an iterable set of any annotations in the collection that match the
- * provided criteria, i.e.
- * <ul>
- * <li>reference the same sequence datasequence</li>
- * <li>have the same calcId (source of annotation)</li>
- * <li>have the same label (type of annotation)</li>
- * </ul>
- *
- * @param datasequence
- * @param calcId
- * @param label
- * @return
- */
- Iterable<AlignmentAnnotation> findAnnotation(SequenceI datasequence,
- String calcId, String label);
}