updated to jalview 2.1 and begun ArchiveClient/VamsasClient/VamsasStore updates.

[jalview.git] / src / jalview / datamodel / Annotation.java

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index 7858e3f..9aa8913 100755 (executable)
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -15,31 +15,66 @@
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
-*/\r
-package jalview.datamodel;\r
-\r
-import java.awt.*;\r
-\r
-\r
-public class Annotation {\r
-    public String displayCharacter = "";\r
-    public String description = ""; // currently used as mouse over\r
-    public char secondaryStructure = ' '; // recognises H and E\r
-    public float value;\r
-\r
-    // add visual cues here\r
-    public Color colour = Color.black;\r
-\r
-    public Annotation(String displayChar, String desc, char ss, float val) {\r
-        displayCharacter = displayChar;\r
-        description = desc;\r
-        secondaryStructure = ss;\r
-        value = val;\r
-    }\r
-\r
-    public Annotation(String displayChar, String desc, char ss, float val,\r
-        Color colour) {\r
-        this(displayChar, desc, ss, val);\r
-        this.colour = colour;\r
-    }\r
-}\r
+*/
+package jalview.datamodel;
+
+import java.awt.*;
+
+
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
+public class Annotation
+{
+    /** DOCUMENT ME!! */
+    public String displayCharacter = "";
+
+    /** DOCUMENT ME!! */
+    public String description = ""; // currently used as mouse over
+
+    /** DOCUMENT ME!! */
+    public char secondaryStructure = ' '; // recognises H and E
+
+    /** DOCUMENT ME!! */
+    public float value;
+
+    // add visual cues here
+
+    /** DOCUMENT ME!! */
+    public Color colour = Color.black;
+
+    /**
+     * Creates a new Annotation object.
+     *
+     * @param displayChar DOCUMENT ME!
+     * @param desc DOCUMENT ME!
+     * @param ss DOCUMENT ME!
+     * @param val DOCUMENT ME!
+     */
+    public Annotation(String displayChar, String desc, char ss, float val)
+    {
+        displayCharacter = displayChar;
+        description = desc;
+        secondaryStructure = ss;
+        value = val;
+    }
+
+    /**
+     * Creates a new Annotation object.
+     *
+     * @param displayChar DOCUMENT ME!
+     * @param desc DOCUMENT ME!
+     * @param ss DOCUMENT ME!
+     * @param val DOCUMENT ME!
+     * @param colour DOCUMENT ME!
+     */
+    public Annotation(String displayChar, String desc, char ss, float val,
+        Color colour)
+    {
+        this(displayChar, desc, ss, val);
+        this.colour = colour;
+    }
+}