updated to jalview 2.1 and begun ArchiveClient/VamsasClient/VamsasStore updates.

[jalview.git] / src / jalview / datamodel / Annotation.java

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index b99ce9f..9aa8913 100755 (executable)
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -16,29 +16,65 @@
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
 */
-
 package jalview.datamodel;
+
 import java.awt.*;
 
+
+/**
+ * DOCUMENT ME!
+ *
+ * @author $author$
+ * @version $Revision$
+ */
 public class Annotation
 {
-  public String displayCharacter="";
-  public String description="";       // currently used as mouse over
-  public char secondaryStructure=' '; // recognises H and E
-  public float value;
-
-  // add visual cues here
-  public Color colour = Color.black;
-
-  public Annotation(String displayChar, String desc, char ss, float val)
-  {
-    displayCharacter = displayChar;
-    description = desc;
-    secondaryStructure = ss;
-    value = val;
-  }
-  public Annotation(String displayChar, String desc, char ss, float val, Color colour) {
-    this(displayChar, desc, ss, val);
-    this.colour = colour;
-  }
+    /** DOCUMENT ME!! */
+    public String displayCharacter = "";
+
+    /** DOCUMENT ME!! */
+    public String description = ""; // currently used as mouse over
+
+    /** DOCUMENT ME!! */
+    public char secondaryStructure = ' '; // recognises H and E
+
+    /** DOCUMENT ME!! */
+    public float value;
+
+    // add visual cues here
+
+    /** DOCUMENT ME!! */
+    public Color colour = Color.black;
+
+    /**
+     * Creates a new Annotation object.
+     *
+     * @param displayChar DOCUMENT ME!
+     * @param desc DOCUMENT ME!
+     * @param ss DOCUMENT ME!
+     * @param val DOCUMENT ME!
+     */
+    public Annotation(String displayChar, String desc, char ss, float val)
+    {
+        displayCharacter = displayChar;
+        description = desc;
+        secondaryStructure = ss;
+        value = val;
+    }
+
+    /**
+     * Creates a new Annotation object.
+     *
+     * @param displayChar DOCUMENT ME!
+     * @param desc DOCUMENT ME!
+     * @param ss DOCUMENT ME!
+     * @param val DOCUMENT ME!
+     * @param colour DOCUMENT ME!
+     */
+    public Annotation(String displayChar, String desc, char ss, float val,
+        Color colour)
+    {
+        this(displayChar, desc, ss, val);
+        this.colour = colour;
+    }
 }