RepresentGroup count items

[jalview.git] / src / jalview / datamodel / BinarySequence.java

diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java
index 7d03404..af10e1d 100755 (executable)
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -1,6 +1,6 @@
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
 *\r
 * This program is free software; you can redistribute it and/or\r
 * modify it under the terms of the GNU General Public License\r
@@ -64,9 +64,7 @@ public class BinarySequence extends Sequence
 \r
             try\r
             {\r
-                aanum = ((Integer) ResidueProperties.getAAHash().get(getSequence()\r
-                                                                         .substring(i,\r
-                            i + 1))).intValue();\r
+                aanum = ResidueProperties.aaIndex[getSequence().charAt(i)];\r
             }\r
             catch (NullPointerException e)\r
             {\r
@@ -101,9 +99,7 @@ public class BinarySequence extends Sequence
 \r
             try\r
             {\r
-                aanum = ((Integer) ResidueProperties.getAAHash().get(getSequence()\r
-                                                                         .substring(i,\r
-                            i + 1))).intValue();\r
+                aanum = ResidueProperties.aaIndex[getSequence().charAt(i)];\r
             }\r
             catch (NullPointerException e)\r
             {\r