*/
package jalview.datamodel;
-import htsjdk.samtools.Cigar;
-
import java.util.List;
public class CigarArray extends CigarBase
{
this(constructSeqCigarArray(alignment, selectionGroup));
constructFromAlignment(alignment,
- hidden != null ? hidden.getListOfCols()
+ hidden != null ? hidden.getHiddenRegions()
: null, selectionGroup);
}
}
/**
- * @see Cigar.getSequenceAndDeletions
+ * @see CigarBase.getSequenceAndDeletions
* @param GapChar
* char
* @return Object[][]