}
return aa;
}
+
+ @Override
+ public ContactMatrixI getContactMatrixFor(AlignmentAnnotation ann)
+ {
+ return contactmaps == null ? null : contactmaps.get(ann.annotationId);
+ }
+
+ @Override
+ public void addContactListFor(AlignmentAnnotation annotation,
+ ContactMatrixI cm)
+ {
+ contactmaps.put(annotation.annotationId, cm);
+ }
}