package jalview.datamodel;
+import java.awt.Color;
+import java.math.BigInteger;
import java.util.ArrayList;
+import java.util.BitSet;
+import java.util.HashMap;
import java.util.List;
+import java.util.Spliterator;
import java.util.StringTokenizer;
import jalview.bin.Console;
}
@Override
- public boolean hasReferenceSeq()
+ public String getAnnotLabel()
{
- // TODO Auto-generated method stub
- return false;
+ return "Contact Matrix";
}
@Override
- public SequenceI getReferenceSeq()
+ public String getAnnotDescr()
{
- // TODO Auto-generated method stub
- return null;
+ return "Contact Matrix";
}
-
+ GroupSet grps = new GroupSet();
@Override
- public String getAnnotLabel()
+ public GroupSetI getGroupSet()
{
- return "Contact Matrix";
+ return grps;
}
-
@Override
- public String getAnnotDescr()
+ public void setGroupSet(GroupSet makeGroups)
{
- return "Contact Matrix";
+ grps = makeGroups;
}
-
public static String contactToFloatString(ContactMatrixI cm)
{
StringBuilder sb = new StringBuilder();
float[][] vals = new float[cols][rows];
StringTokenizer tabsep = new StringTokenizer(values, "" + '\t');
int c = 0, r = 0;
-
while (tabsep.hasMoreTokens())
{
double elem = Double.valueOf(tabsep.nextToken());
}
if (c >= vals.length)
{
-
break;
}
}
Console.warn(
"Ignoring additional elements for Float string to contact matrix parsing.");
}
-
return vals;
}
}