*/
package jalview.datamodel;
+import java.util.Locale;
+
import jalview.api.DBRefEntryI;
import jalview.util.DBRefUtils;
import jalview.util.MapList;
String canonicalSourceName;
- boolean isCanonicalAccession;
+ boolean isCanonicalAccession=false;
/*
* maps from associated sequence to the database sequence's coordinate system
Mapping map,boolean isCanonical)
{
- this.source = source.toUpperCase();
+ this.source = source.toUpperCase(Locale.ROOT);
setVersion(version);
this.accessionId = accessionId;
this.map = map;
public void setAccessionId(String accessionId)
{
this.accessionId = accessionId;
-// this.accessionId = (accessionId == null ? "" : accessionId).toUpperCase();
+// this.accessionId = (accessionId == null ? "" : accessionId).toUpperCase(Locale.ROOT);
}
/**
{
this.source = source;
-// this.source = (source == null ? "" : source).toUpperCase();
+// this.source = (source == null ? "" : source).toUpperCase(Locale.ROOT);
// this.canonicalSourceName = DBRefUtils.getCanonicalName(this.source);
// this.sourceKey = DBRefSource.getSourceKey(this.canonicalSourceName);
}
public void setVersion(String version)
{
this.version = version;
- this.ucversion = (version == null ? null : version.toUpperCase());
+ this.ucversion = (version == null ? null : version.toUpperCase(Locale.ROOT));
}
@Override