{
this(source, version, accessionId, null);
}
+ /**
+ *
+ * @param source canonical source (uppercase only)
+ * @param version (source dependent version string)
+ * @param accessionId (source dependent accession number string)
+ * @param map (mapping from local sequence numbering to source accession numbering)
+ */
public DBRefEntry(String source, String version, String accessionId, Mapping map) {
- this.source = source;
+ this.source = source.toUpperCase();
this.version = version;
this.accessionId = accessionId;
this.map = map;
}
public DBRefEntry(DBRefEntry entry)
{
- this(new String(entry.source), new String(entry.version), new String(entry.accessionId), new Mapping(entry.map));
+ this((entry.source==null ? "" : new String(entry.source)),
+ (entry.version==null ? "" : new String(entry.version)),
+ (entry.accessionId==null ? "" : new String(entry.accessionId)),
+ (entry.map==null ? null : new Mapping(entry.map)));
}
public boolean equals(DBRefEntry entry) {
if (entry==this)
}
if (entry==this)
return true;
- if ((source!=null && entry.source!=null && source.equals(entry.source))
+ if ((source!=null && entry.source!=null && source.equalsIgnoreCase(entry.source))
&&
- (accessionId!=null && entry.accessionId!=null && accessionId.equals(entry.accessionId))
+ (accessionId!=null && entry.accessionId!=null && accessionId.equalsIgnoreCase(entry.accessionId))
&&
- (version!=null && entry.version!=null && version.equals(entry.version))
+ (version!=null && entry.version!=null && version.equalsIgnoreCase(entry.version))
)
{
return true;
}
public boolean hasMap()
{
- // TODO Auto-generated method stub
return map!=null;
}
/**