public static final String UNIPROT = "UNIPROT";
- public static final String UP_NAME = "UNIPROT_NAME".toUpperCase();
+
+ public static final String UP_NAME = "UNIPROT_NAME";
/**
* Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
*/
public static final String EMBLCDSProduct = "EMBLCDSProtein".toUpperCase();
public static final String PDB = "PDB";
- public static final String PFAM = "PFAM";
+
+ public static final String PFAM = "PFAM";
+
public static final String RFAM = "RFAM";
public static final String GENEDB = "GeneDB".toUpperCase();
+ public static final String PFAM_FULL = "PFAM (Full)";
+
+ public static final String PFAM_SEED = "PFAM (Seed)";
+
+ public static final String RFAM_SEED = "RFAM (Seed)";
+
public static final String PDB_CANONICAL_NAME = PDB;
// CODINGDBS, DNACODINGDBS, PROTEINDBS };
//
public static final int PRIMARY_SOURCES_MASK = CODING_MASK | DNA_CODING_MASK | PROTEIN_MASK;
-
+
public static boolean isPrimarySource(String source)
{
return ((PRIMARY_SOURCES_MASK & getSourceKey(source)) != 0);