/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
*
* This file is part of Jalview.
*
/**
* UNIPROT Entry Name
*/
- public static String UP_NAME = "UNIPROT_NAME";
+ public static String UP_NAME = "UNIPROT_NAME".toUpperCase();
/**
* Uniprot Knowledgebase/TrEMBL as served from EMBL protein products.
*/
- public static final String UNIPROTKB = "UniProtKB/TrEMBL";
+ public static final String UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase();
+
+ public static final String EMBLCDSProduct = "EMBLCDSProtein"
+ .toUpperCase();
/**
* PDB Entry Code
/**
* GeneDB ID
*/
- public static final String GENEDB = "GeneDB";
+ public static final String GENEDB = "GeneDB".toUpperCase();
/**
* List of databases whose sequences might have coding regions annotated
*/
- public static final String[] DNACODINGDBS =
- { EMBL, EMBLCDS, GENEDB };
+ public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB };
- public static final String[] CODINGDBS =
- { EMBLCDS, GENEDB };
+ public static final String[] CODINGDBS = { EMBLCDS, GENEDB };
- public static final String[] PROTEINDBS =
- { UNIPROT, PDB, UNIPROTKB };
+ public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
+ EMBLCDSProduct };
- public static final String[] PROTEINSEQ =
- { UNIPROT, UNIPROTKB };
+ public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB,
+ EMBLCDSProduct };
- public static final String[] PROTEINSTR =
- { PDB };
+ public static final String[] PROTEINSTR = { PDB };
- public static final String[] DOMAINDBS =
- { PFAM, RFAM };
+ public static final String[] DOMAINDBS = { PFAM, RFAM };
/**
* set of unique DBRefSource property constants. These could be used to