added aligned codon frames, and dataset reference ids for sequenceSet and sequences...

[jalview.git] / src / jalview / datamodel / Provenance.java

diff --git a/src/jalview/datamodel/Provenance.java b/src/jalview/datamodel/Provenance.java
index e52c855..f8afedf 100755 (executable)
--- a/src/jalview/datamodel/Provenance.java
+++ b/src/jalview/datamodel/Provenance.java
@@ -1,4 +1,23 @@
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ */\r
 package jalview.datamodel;\r
+\r
 import java.util.*;\r
 \r
 public class Provenance\r
@@ -11,16 +30,18 @@ public class Provenance
 \r
   public ProvenanceEntry[] getEntries()\r
   {\r
-    ProvenanceEntry [] ret = new ProvenanceEntry[entries.size()];\r
-    for(int i=0; i<entries.size(); i++)\r
-       ret[i] = (ProvenanceEntry)entries.elementAt(i);\r
+    ProvenanceEntry[] ret = new ProvenanceEntry[entries.size()];\r
+    for (int i = 0; i < entries.size(); i++)\r
+    {\r
+      ret[i] = (ProvenanceEntry) entries.elementAt(i);\r
+    }\r
     return ret;\r
   }\r
 \r
-  public void addEntry(String user, String action, java.util.Date date, String id)\r
+  public void addEntry(String user, String action, java.util.Date date,\r
+                       String id)\r
   {\r
-    entries.addElement( new ProvenanceEntry(user,action,date,id));\r
+    entries.addElement(new ProvenanceEntry(user, action, date, id));\r
   }\r
 \r
 }\r
-\r