*/
int getEnd();
+ /**
+ * Answers true if this match is for the given sequence and includes (matches
+ * or encloses) the given start-end range
+ *
+ * @param seq
+ * @param start
+ * @param end
+ * @return
+ */
+ boolean contains(SequenceI seq, int start, int end);
+
+ /**
+ *
+ * @param seq
+ * @param from - first position to highlight
+ * @param to - last position to highlight (assumed higher than from)
+ * @return true iff from-to intersects or marks positions either side of start/end
+ */
+ boolean adjacent(SequenceI seq, int from, int to);
}
\ No newline at end of file