Merge branch 'improvement/JAL-4023_snotation_for_trees' into develop

[jalview.git] / src / jalview / datamodel / SearchResults.java

diff --git a/src/jalview/datamodel/SearchResults.java b/src/jalview/datamodel/SearchResults.java
index 7c3bba7..880f970 100755 (executable)
--- a/src/jalview/datamodel/SearchResults.java
+++ b/src/jalview/datamodel/SearchResults.java
@@ -234,8 +234,8 @@ public class SearchResults implements SearchResultsI
       {
         mfound = true;
         matchStart = sequence.findIndex(m.start) - 1;
-        matchEnd = m.start == m.end ? matchStart : sequence
-                .findIndex(m.end) - 1;
+        matchEnd = m.start == m.end ? matchStart
+                : sequence.findIndex(m.end) - 1;
       }
 
       if (mfound)
@@ -349,8 +349,10 @@ public class SearchResults implements SearchResultsI
   }
 
   /**
-   * Two SearchResults are considered equal if they contain the same matches in
-   * the same order.
+   * Two SearchResults are considered equal if they contain the same matches
+   * (Sequence, start position, end position) in the same order
+   * 
+   * @see Match#equals(Object)
    */
   @Override
   public boolean equals(Object obj)