JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from...

[jalview.git] / src / jalview / datamodel / SecondaryStructureAnnotation.java

diff --git a/src/jalview/datamodel/SecondaryStructureAnnotation.java b/src/jalview/datamodel/SecondaryStructureAnnotation.java
index 590d1e1..e395648 100644 (file)
--- a/src/jalview/datamodel/SecondaryStructureAnnotation.java
+++ b/src/jalview/datamodel/SecondaryStructureAnnotation.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -25,7 +25,9 @@ import fr.orsay.lri.varna.models.rna.RNA;
 public class SecondaryStructureAnnotation extends AlignmentAnnotation
 {
 
-  private static RNA _rna = null;
+  // was static, but that cannot work here
+
+  private RNA _rna = null;
 
   public SecondaryStructureAnnotation(RNA rna)
   {
@@ -44,7 +46,7 @@ public class SecondaryStructureAnnotation extends AlignmentAnnotation
     Annotation[] ann = new Annotation[rna.getSize()];
     for (int i = 0; i < ann.length; i++)
     {
-      ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);
+      ann[i] = new Annotation(rna.getStructDBN(true), "", ' ', 0f);
       ;
     }
     return ann;