Merge branch 'develop' into development/Release_2_12_Branch_JAL-4102_21126_merge

[jalview.git] / src / jalview / datamodel / SeqCigar.java

diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java
index 34697b3..07a62c9 100644 (file)
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -22,6 +22,7 @@ package jalview.datamodel;
 
 import jalview.analysis.AlignSeq;
 import jalview.analysis.SeqsetUtils;
+import jalview.analysis.SeqsetUtils.SequenceInfo;
 import jalview.util.MessageManager;
 import jalview.util.ShiftList;
 
@@ -37,7 +38,7 @@ public class SeqCigar extends CigarSimple
 
   private SequenceI refseq = null;
 
-  private Hashtable seqProps;
+  private SequenceInfo seqProps;
 
   /**
    * Reference dataset sequence for the cigar string
@@ -587,7 +588,6 @@ public class SeqCigar extends CigarSimple
                       + (bounds[2] == 0 ? -1 : bounds[2]));
       seqs[i].setDatasetSequence(ref);
       seqs[i].setDescription(ref.getDescription());
-      SeqsetUtils.SeqCharacterUnhash(seqs[i],alseqs[i].seqProps,true,true);
     }
     if (segments != null)
     {