import jalview.util.MapList;
import jalview.ws.datamodel.alphafold.MappableContactMatrix;
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/**
* Dummy contact matrix based on sequence distance
*
implements ContactMatrixI
{
private static final String SEQUENCE_DISTANCE = "SEQUENCE_DISTANCE";
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private int width = 0;
public SeqDistanceContactMatrix(int width)
{
return width;
}
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@Override
protected double getElementAt(int _column, int i)
{
return Math.abs(_column - i);
}
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@Override
protected SeqDistanceContactMatrix newMappableContactMatrix(
SequenceI newRefSeq, MapList newFromMapList)