* @author jprocter
*
*/
-public class SeqDistanceContactMatrix extends MappableContactMatrix<SeqDistanceContactMatrix> implements ContactMatrixI
+public class SeqDistanceContactMatrix
+ extends MappableContactMatrix<SeqDistanceContactMatrix>
+ implements ContactMatrixI
{
private static final String SEQUENCE_DISTANCE = "SEQUENCE_DISTANCE";
+
private int width = 0;
public SeqDistanceContactMatrix(int width)
}
});
}
+
@Override
public String getAnnotDescr()
{
{
return width;
}
+
@Override
protected double getElementAt(int _column, int i)
{
- return Math.abs(_column-i);
+ return Math.abs(_column - i);
}
@Override
protected SeqDistanceContactMatrix newMappableContactMatrix(
SequenceI newRefSeq, MapList newFromMapList)
{
-
+
return new SeqDistanceContactMatrix(width);
}
}