Hidden representatives moved from sequence to viewport

[jalview.git] / src / jalview / datamodel / Sequence.java

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index 39d6880..02fc543 100755 (executable)
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -30,7 +30,6 @@ import java.util.*;
  */
 public class Sequence implements SequenceI
 {
-  
   SequenceI datasetSequence;
   String name;
   private char [] sequence;
@@ -48,10 +47,6 @@ public class Sequence implements SequenceI
   /** DOCUMENT ME!! */
   public SequenceFeature[] sequenceFeatures;
 
-  /** This array holds hidden sequences
-   * of which this sequence is the representitive member of a group
-   */
-  SequenceGroup hiddenSequences;
 
   /**
    * Creates a new Sequence object.
@@ -690,32 +685,11 @@ public class Sequence implements SequenceI
     this.annotation.addElement(annotation);
   }
 
-  public SequenceGroup getHiddenSequences()
-  {
-    return hiddenSequences;
-  }
 
-  public void addHiddenSequence(SequenceI seq)
-  {
-    if (hiddenSequences == null)
-    {
-      hiddenSequences = new SequenceGroup();
-    }
-    hiddenSequences.addSequence(seq, false);
-  }
-
-  public void showHiddenSequence(SequenceI seq)
-  {
-    hiddenSequences.deleteSequence(seq, false);
-    if (hiddenSequences.getSize(false) < 1)
-    {
-      hiddenSequences = null;
-    }
-  }
   /**
    * test if this is a valid candidate for another
-   * sequence's dataset sequence. 
-   * 
+   * sequence's dataset sequence.
+   *
    */
   private boolean isValidDatasetSequence() {
       if (datasetSequence!=null)