import jalview.analysis.AlignSeq;
import jalview.api.DBRefEntryI;
+import jalview.datamodel.features.SequenceFeatures;
import jalview.util.Comparison;
import jalview.util.DBRefUtils;
import jalview.util.MapList;
/** array of sequence features - may not be null for a valid sequence object */
public SequenceFeature[] sequenceFeatures;
+ private SequenceFeatures sequenceFeatureStore;
+
/**
* Creates a new Sequence object.
*
this.sequence = sequence2;
this.start = start2;
this.end = end2;
+ sequenceFeatureStore = new SequenceFeatures();
parseId();
checkValidRange();
}
temp[sequenceFeatures.length] = sf;
sequenceFeatures = temp;
+
+ sequenceFeatureStore.add(sf);
return true;
}
}
}
+ @Override
+ public List<SequenceFeature> findFeatures(String type, int from, int to)
+ {
+ if (datasetSequence != null)
+ {
+ return datasetSequence.findFeatures(type, from, to);
+ }
+ return sequenceFeatureStore.findFeatures(type, from, to);
+ }
}