JAL-2629 choice of hmm profile now a parameter not a selection, apis simplified

[jalview.git] / src / jalview / datamodel / SequenceCollectionI.java

diff --git a/src/jalview/datamodel/SequenceCollectionI.java b/src/jalview/datamodel/SequenceCollectionI.java
index ee4b844..a280079 100644 (file)
--- a/src/jalview/datamodel/SequenceCollectionI.java
+++ b/src/jalview/datamodel/SequenceCollectionI.java
@@ -72,14 +72,10 @@ public interface SequenceCollectionI
   boolean isNucleotide();
 
   /**
-   * Returns the HMM consensus sequence (if any) for the collection, or null
+   * Returns the (possibly empty) list of HMM consensus sequences in the
+   * collection
    * 
    * @return
    */
-  SequenceI getHmmConsensus();
-
-  /**
-   * Sets the HMM consensus sequence for the collection
-   */
-  void setHmmConsensus(SequenceI hmmSeq);
+  List<SequenceI> getHmmSequences();
 }