*/
public ColourSchemeI cs;
+ // start column (base 0)
int startRes = 0;
+ // end column (base 0)
int endRes = 0;
public Color outlineColour = Color.black;
if (seqs[ipos] != null)
{
seqs[ipos].setDescription(seq.getDescription());
- seqs[ipos].setDBRef(seq.getDBRef());
+ seqs[ipos].setDBRefs(seq.getDBRefs());
seqs[ipos].setSequenceFeatures(seq.getSequenceFeatures());
if (seq.getDatasetSequence() != null)
{
{
synchronized (sequences)
{
- if (sequences.contains(s))
- {
- deleteSequence(s, recalc);
- }
- else
- {
- addSequence(s, recalc);
+ if (sequences.contains(s))
+ {
+ deleteSequence(s, recalc);
+ }
+ else
+ {
+ addSequence(s, recalc);
}
}
}
synchronized (sequences)
{
// MC This needs to get reset when characters are inserted and deleted
- boolean first=true;
- for (SequenceI seq:sequences) {
+ boolean first = true;
+ for (SequenceI seq : sequences)
+ {
if (first || seq.getLength() > width)
{
width = seq.getLength();