{
return context;
}
-
- @Override
- public Iterable<AlignmentAnnotation> findAnnotation(
- SequenceI datasequence, String calcId, String label)
- {
- List<AlignmentAnnotation> result = new ArrayList<AlignmentAnnotation>();
- for (AlignmentAnnotation ann : getAlignmentAnnotation())
- {
- // only sequence-linked annotations can qualify (have a datasequence)
- if (ann.sequenceRef == null)
- {
- continue;
- }
- boolean matchDatasequence = (ann.sequenceRef.getDatasetSequence() == datasequence);
- final String annCalcId = ann.getCalcId();
- boolean matchCalcId = (annCalcId != null && annCalcId.equals(calcId));
- boolean matchLabel = (ann.label != null && ann.label.equals(label));
- if (matchDatasequence && matchCalcId && matchLabel)
- {
- result.add(ann);
- }
- }
- return result;
- }
}