import jalview.analysis.AAFrequency;
import jalview.analysis.Conservation;
-import jalview.analysis.Profile;
import jalview.schemes.ColourSchemeI;
import java.awt.Color;
boolean upd = false;
try
{
- Profile[] cnsns = AAFrequency.calculate(sequences, startRes,
+ ProfileI[] cnsns = AAFrequency.calculate(sequences, startRes,
endRes + 1, showSequenceLogo);
if (consensus != null)
{
c.completeAnnotations(conservation, null, startRes, endRes + 1);
}
- public Profile[] consensusData = null;
+ public ProfileI[] consensusData = null;
- private void _updateConsensusRow(Profile[] cnsns, long nseq)
+ private void _updateConsensusRow(ProfileI[] cnsns, long nseq)
{
if (consensus == null)
{