JAL-1807 explicit imports (jalview.structure)

[jalview.git] / src / jalview / datamodel / SequenceGroup.java

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index feb714a..2fe03e1 100755 (executable)
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -24,6 +24,7 @@ import jalview.analysis.AAFrequency;
 import jalview.analysis.Conservation;
 import jalview.schemes.ColourSchemeI;
 import jalview.schemes.ResidueProperties;
+import jalview.util.Comparison;
 
 import java.awt.Color;
 import java.util.ArrayList;
@@ -76,8 +77,10 @@ public class SequenceGroup implements AnnotatedCollectionI
    */
   public ColourSchemeI cs;
 
+  // start column (base 0)
   int startRes = 0;
 
+  // end column (base 0)
   int endRes = 0;
 
   public Color outlineColour = Color.black;
@@ -278,7 +281,7 @@ public class SequenceGroup implements AnnotatedCollectionI
     for (int j = 0; j < endRes + 1 && j < seq.getLength(); j++)
     {
       ch = seq.getCharAt(j);
-      if (!jalview.util.Comparison.isGap((ch)))
+      if (!Comparison.isGap((ch)))
       {
         eres++;
       }