patched for JAL-531 - only display full symbol distribution stats on tooltip/annotati...

[jalview.git] / src / jalview / datamodel / SequenceGroup.java

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index cc71e4a..451250e 100755 (executable)
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -1079,17 +1079,18 @@ public class SequenceGroup
   }
 
   /**
-   * @param includeAllConsSymbols
-   *          the includeAllConsSymbols to set
+   * @param showSequenceLogo
+   *          indicates if a sequence logo is shown for consensus annotation
    */
-  public void setIncludeAllConsSymbols(boolean includeAllConsSymbols)
+  public void setshowSequenceLogo(boolean showSequenceLogo)
   {
-    if (this.showSequenceLogo != includeAllConsSymbols && consensus != null)
+    // TODO: decouple calculation from settings update
+    if (this.showSequenceLogo != showSequenceLogo && consensus != null)
     {
-      this.showSequenceLogo = includeAllConsSymbols;
+      this.showSequenceLogo = showSequenceLogo;
       recalcConservation();
     }
-    this.showSequenceLogo = includeAllConsSymbols;
+    this.showSequenceLogo = showSequenceLogo;
   }
 
   /**