SequenceI[] seqs=new SequenceI[sz=sequences.size()];\r
for(int i=0; i<sz; i++)\r
{\r
- SequenceI seq = (SequenceI) sequences.get(i);\r
+ SequenceI seq = (SequenceI) sequences.elementAt(i);\r
int index = al.findIndex(seq);\r
orderedSeqs.put(index+"", seq);\r
}\r