normalised logo rendering (JAL-958)

[jalview.git] / src / jalview / datamodel / SequenceGroup.java

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 3d848a2..6bee416 100755 (executable)
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -91,6 +91,11 @@ public class SequenceGroup
    * consensus calculation property
    */
   private boolean showSequenceLogo = false;
+  /**
+   * flag indicating if logo should be rendered normalised
+   */
+  private boolean normaliseSequenceLogo;
+
 
   /**
    * @return the includeAllConsSymbols
@@ -1167,4 +1172,17 @@ public class SequenceGroup
   {
     return showConsensusHistogram;
   }
+
+  /**
+   * set flag indicating if logo should be normalised when rendered
+   * @param norm
+   */
+  public void setNormaliseSequenceLogo(boolean norm)
+  {
+    normaliseSequenceLogo=norm;
+  }
+  public boolean isNormaliseSequenceLogo()
+  {
+    return normaliseSequenceLogo;
+  }
 }