newannot.restrict(startRes, endRes);
newannot.setSequenceRef(seqs[ipos]);
newannot.adjustForAlignment();
- ContactMatrixI cm = seq.getContactMatrixFor(seq.getAnnotation()[a]);
- if (cm!=null)
+ ContactMatrixI cm = seq
+ .getContactMatrixFor(seq.getAnnotation()[a]);
+ if (cm != null)
{
seqs[ipos].addContactListFor(newannot, cm);
}
} catch (java.lang.OutOfMemoryError err)
{
// TODO: catch OOM
- jalview.bin.Console.outPrintln("Out of memory loading groups: " + err);
+ jalview.bin.Console
+ .outPrintln("Out of memory loading groups: " + err);
}
return upd;
}