import jalview.analysis.AAFrequency;
import jalview.analysis.Conservation;
import jalview.schemes.ColourSchemeI;
-import jalview.schemes.ResidueProperties;
import java.awt.Color;
import java.util.ArrayList;
if ((conservation != null)
|| (cs != null && cs.conservationApplied()))
{
- Conservation c = new Conservation(groupName,
- ResidueProperties.propHash, 3, sequences, startRes,
- endRes + 1);
+ Conservation c = new Conservation(groupName, 3, sequences,
+ startRes, endRes + 1);
c.calculate();
c.verdict(false, consPercGaps);
if (conservation != null)