import jalview.analysis.AAFrequency;
import jalview.analysis.Conservation;
-import jalview.schemes.CollectionColourScheme;
-import jalview.schemes.CollectionColourSchemeI;
+import jalview.renderer.ResidueShader;
+import jalview.renderer.ResidueShaderI;
import jalview.schemes.ColourSchemeI;
import java.awt.Color;
/**
* Colourscheme applied to group if any
*/
- public CollectionColourSchemeI cs;
+ public ResidueShaderI cs;
// start column (base 0)
int startRes = 0;
public SequenceGroup()
{
groupName = "JGroup:" + this.hashCode();
- cs = new CollectionColourScheme();
+ cs = new ResidueShader();
}
/**
this.displayBoxes = displayBoxes;
this.displayText = displayText;
this.colourText = colourText;
- this.cs = new CollectionColourScheme(scheme);
+ this.cs = new ResidueShader(scheme);
startRes = start;
endRes = end;
recalcConservation();
{
if (cs == null)
{
- cs = new CollectionColourScheme();
+ cs = new ResidueShader();
}
cs.setColourScheme(scheme);
}
- public void setGroupColourScheme(CollectionColourSchemeI scheme)
+ public void setGroupColourScheme(ResidueShaderI scheme)
{
cs = scheme;
}
return cs == null ? null : cs.getColourScheme();
}
- public CollectionColourSchemeI getGroupColourScheme()
+ public ResidueShaderI getGroupColourScheme()
{
return cs;
}