boolean colourText = false;
+ HiddenMarkovModel hmm;
+
/**
* True if the group is defined as a group on the alignment, false if it is
* just a selection.
{
return (startRes <= apos && endRes >= apos) && sequences.contains(seq);
}
+
+ @Override
+ public HiddenMarkovModel getHMM()
+ {
+ // TODO Auto-generated method stub
+ return hmm;
+ }
+
+ @Override
+ public void setHMM(HiddenMarkovModel markov)
+ {
+ hmm = markov;
+
+ }
}