JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing glob

[jalview.git] / src / jalview / datamodel / SequenceGroup.java

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 3439248..c02a5e3 100755 (executable)
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,6 +20,11 @@
  */
 package jalview.datamodel;
 
+import jalview.analysis.AAFrequency;
+import jalview.analysis.Conservation;
+import jalview.schemes.ColourSchemeI;
+import jalview.schemes.ResidueProperties;
+
 import java.awt.Color;
 import java.util.ArrayList;
 import java.util.Hashtable;
@@ -27,11 +32,6 @@ import java.util.List;
 import java.util.Map;
 import java.util.Vector;
 
-import jalview.analysis.AAFrequency;
-import jalview.analysis.Conservation;
-import jalview.schemes.ColourSchemeI;
-import jalview.schemes.ResidueProperties;
-
 /**
  * Collects a set contiguous ranges on a set of sequences
  * 
@@ -613,13 +613,13 @@ public class SequenceGroup implements AnnotatedCollectionI
   {
     synchronized (sequences)
     {
-    if (sequences.contains(s))
-    {
-      deleteSequence(s, recalc);
-    }
-    else
-    {
-      addSequence(s, recalc);
+      if (sequences.contains(s))
+      {
+        deleteSequence(s, recalc);
+      }
+      else
+      {
+        addSequence(s, recalc);
       }
     }
   }
@@ -775,8 +775,9 @@ public class SequenceGroup implements AnnotatedCollectionI
     synchronized (sequences)
     {
       // MC This needs to get reset when characters are inserted and deleted
-      boolean first=true;
-      for (SequenceI seq:sequences) {
+      boolean first = true;
+      for (SequenceI seq : sequences)
+      {
         if (first || seq.getLength() > width)
         {
           width = seq.getLength();