\r
try\r
{\r
- cs.setConsensus(AAFrequency.calculate(sequences, 0, getWidth()));\r
+ cs.setConsensus(AAFrequency.calculate(sequences, startRes, endRes+1));\r
\r
if (cs instanceof ClustalxColourScheme)\r
{\r
{\r
Conservation c = new Conservation(groupName,\r
ResidueProperties.propHash, 3, sequences,\r
- 0, getWidth());\r
+ startRes, endRes+1);\r
c.calculate();\r
c.verdict(false, 25);\r
\r