int startRes = 0;\r
int endRes = 0;\r
Color outlineColour = Color.black;\r
+ public int thresholdTextColour = 0;\r
+ public Color textColour = Color.black;\r
+ public Color textColour2 = Color.white;\r
+\r
\r
/**\r
* Creates a new SequenceGroup object.\r
\r
try\r
{\r
- cs.setConsensus(AAFrequency.calculate(sequences, 0, getWidth()));\r
+ cs.setConsensus(AAFrequency.calculate(sequences, startRes, endRes+1));\r
\r
if (cs instanceof ClustalxColourScheme)\r
{\r
{\r
Conservation c = new Conservation(groupName,\r
ResidueProperties.propHash, 3, sequences,\r
- 0, getWidth());\r
+ startRes, endRes+1);\r
c.calculate();\r
c.verdict(false, 25);\r
\r