Fire alignment changed if seqs hidden / revealed

[jalview.git] / src / jalview / datamodel / SequenceI.java

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index f822fe6..0842d94 100755 (executable)
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -18,10 +18,10 @@
  */\r
 package jalview.datamodel;\r
 \r
-import java.awt.*;\r
-\r
 import java.util.*;\r
 \r
+import java.awt.*;\r
+\r
 \r
 /**\r
  * DOCUMENT ME!\r
@@ -111,7 +111,13 @@ public interface SequenceI
      * @return DOCUMENT ME!\r
      */\r
     public String getSequence(int start, int end);\r
-\r
+    /**\r
+     * create a new sequence object from start to end of this sequence\r
+     * @param start int\r
+     * @param end int\r
+     * @return SequenceI\r
+     */\r
+    public SequenceI getSubSequence(int start, int end);\r
     /**\r
      * DOCUMENT ME!\r
      *\r
@@ -258,4 +264,11 @@ public interface SequenceI
 \r
     public void toggleCase(int start, int end);\r
 \r
+  /**\r
+   * getSubSequence from start to end of sequence\r
+   * @param start first residue in subSequence\r
+   * @return SequenceI\r
+   */\r
+  public SequenceI getSubSequence(int start);\r
+\r
 }\r