added description of alignment quality scores and separated

[jalview.git] / src / jalview / datamodel / SequenceI.java

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 82d38b4..089a5f6 100755 (executable)
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -211,14 +211,14 @@ public interface SequenceI
      *\r
      * @return DOCUMENT ME!\r
      */\r
-    public Vector getSequenceFeatures();\r
+    public SequenceFeature[] getSequenceFeatures();\r
 \r
     /**\r
      * DOCUMENT ME!\r
      *\r
      * @param v DOCUMENT ME!\r
      */\r
-    public void setSequenceFeatures(Vector v);\r
+    public void setSequenceFeatures(SequenceFeature [] features);\r
 \r
     /**\r
      * DOCUMENT ME!\r
@@ -251,4 +251,9 @@ public interface SequenceI
     public void setDatasetSequence(SequenceI seq);\r
 \r
     public SequenceI getDatasetSequence();\r
+\r
+    public AlignmentAnnotation [] getAnnotation();\r
+\r
+    public void addAlignmentAnnotation(AlignmentAnnotation annotation);\r
+\r
 }\r