*/\r
public String getName();\r
\r
+\r
/**\r
* DOCUMENT ME!\r
*\r
*\r
* @return DOCUMENT ME!\r
*/\r
- public String getDisplayId();\r
+ public String getDisplayId(boolean jvsuffix);\r
\r
/**\r
* DOCUMENT ME!\r
*\r
* @return DOCUMENT ME!\r
*/\r
- public Vector getSequenceFeatures();\r
+ public SequenceFeature[] getSequenceFeatures();\r
\r
/**\r
* DOCUMENT ME!\r
*\r
* @param v DOCUMENT ME!\r
*/\r
- public void setSequenceFeatures(Vector v);\r
+ public void setSequenceFeatures(SequenceFeature [] features);\r
\r
/**\r
* DOCUMENT ME!\r
*\r
* @param id DOCUMENT ME!\r
*/\r
- public void setPDBId(String id);\r
+ public void setPDBId(Vector ids);\r
\r
/**\r
* DOCUMENT ME!\r
*\r
* @return DOCUMENT ME!\r
*/\r
- public String getPDBId();\r
+ public Vector getPDBId();\r
+\r
+ public void addPDBId(PDBEntry entry);\r
+\r
+ public String getVamsasId();\r
+\r
+ public void setVamsasId(String id);\r
+\r
+ public void setDBRef(Vector dbs);\r
+\r
+ public Vector getDBRef();\r
+\r
+ public void addDBRef(DBRefEntry entry);\r
+\r
+ public void addSequenceFeature(SequenceFeature sf);\r
+\r
+ public void setDatasetSequence(SequenceI seq);\r
+\r
+ public SequenceI getDatasetSequence();\r
+\r
+ public AlignmentAnnotation [] getAnnotation();\r
+\r
+ public void addAlignmentAnnotation(AlignmentAnnotation annotation);\r
+\r
}\r