import jalview.util.MapList;
import jalview.ws.params.InvalidArgumentException;
-import java.awt.Color;
import java.util.BitSet;
import java.util.Iterator;
import java.util.List;
*/
public int firstResidueOutsideIterator(Iterator<int[]> it);
- public Color getColor(int i);
+ /**
+ * @author Bob Hanson 2019.07.30
+ *
+ * get a 4-byte color, with caching
+ *
+ */
+ public int getColor(int i);
- public Color setColor(int i, Color c);
+ /**
+ * @author Bob Hanson 2019.07.30
+ *
+ * set a 4-byte color, with caching
+ *
+ */
+ public int setColor(int i, int argb);
+ /**
+ * @author Bob Hanson 2019.07.30
+ *
+ * allows resetting the color cache
+ *
+ */
public void resetColors();
+ /**
+ * allows passing the result ArrayList as a parameter to avoid unnecessary
+ * construction
+ *
+ * @author Bob Hanson 2019.07.30
+ *
+ *
+ */
+ List<SequenceFeature> findFeatures(int column, String type,
+ List<SequenceFeature> result);
+
+ /**
+ * allows early intervention for renderer if false
+ *
+ * @author Bob Hanson 2019.07.30
+ *
+ */
+ public boolean hasFeatures(String type);
+
}