import fr.orsay.lri.varna.models.rna.RNA;
/**
- * DOCUMENT ME!
+ * Methods for manipulating a sequence, its metadata and related annotation in
+ * an alignment or dataset.
*
* @author $author$
* @version $Revision$
*/
-public interface SequenceI
+public interface SequenceI extends ASequenceI
{
/**
* Set the display name for the sequence
*
* @return DOCUMENT ME!
*/
- public Vector<PDBEntry> getPDBId();
+ public Vector<PDBEntry> getAllPDBEntries();
/**
* add entry to the vector of PDBIds, if it isn't in the list already
public List<int[]> getInsertions();
/**
+ * Given a pdbId String, return the equivalent PDBEntry if available in the
+ * given sequence
*
- * @return returns true if the sequence is hidden
- */
- public boolean isHidden();
-
- /**
- *
- * @param hidden
- * visibility status of the sequence
+ * @param pdbId
+ * @return
*/
- public void setHidden(Boolean hidden);
-
+ public PDBEntry getPDBEntry(String pdbId);
}