*/
public List<DBRefEntry> getPrimaryDBRefs();
- boolean isHMMConsensusSequence();
-
- void setIsHMMConsensusSequence(boolean isHMMConsensusSequence);
-
/**
* Answers true if the sequence has annotation for Hidden Markov Model
* information content, else false
* the iterator to use
* @return a String corresponding to the sequence
*/
- public String getSequenceStringFromIterator(Iterator<int[]> it);
+ String getSequenceStringFromIterator(Iterator<int[]> it);
/**
* Locate the first position in this sequence which is not contained in an
* iterator over regions
* @return first residue not contained in regions
*/
- public int firstResidueOutsideIterator(Iterator<int[]> it);
+ int firstResidueOutsideIterator(Iterator<int[]> it);
+
+ /**
+ * Answers true if this sequence has an associated Hidden Markov Model
+ *
+ * @return
+ */
+ boolean hasHMMProfile();
}